J4_9SRC_011

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAG*CAUAG*CGAAAGG*CGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRC|1|2|G|139
9SRC|1|2|A|140
9SRC|1|2|G|141
*
9SRC|1|2|C|175
9SRC|1|2|A|176
9SRC|1|2|U|177
9SRC|1|2|A|178
9SRC|1|2|G|179
*
9SRC|1|2|C|207
9SRC|1|2|G|208
9SRC|1|2|A|209
9SRC|1|2|A|210
9SRC|1|2|A|211
9SRC|1|2|G|212
9SRC|1|2|G|213
*
9SRC|1|2|C|228
9SRC|1|2|G|229
9SRC|1|2|C|230

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AE

30S ribosomal protein S4e

Chain AJ

30S ribosomal protein S8e