J4_9SRD_006

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GACUG*CACAG*(4AC)GAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|1|G|2028
9SRD|1|1|A|2029
9SRD|1|1|C|2030
9SRD|1|1|U|2031
9SRD|1|1|G|2032
*
9SRD|1|1|C|2044
9SRD|1|1|A|2045
9SRD|1|1|C|2046
9SRD|1|1|A|2047
9SRD|1|1|G|2048
*
9SRD|1|1|4AC|2083
9SRD|1|1|G|2084
9SRD|1|1|A|2085
9SRD|1|1|C|2086
*
9SRD|1|1|G|2216
9SRD|1|1|U|2217
9SRD|1|1|A|2218
9SRD|1|1|A|2219
9SRD|1|1|C|2220

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain A0

Small ribosomal subunit protein eS32

Chain BB

Large ribosomal subunit protein uL2

Chain Bi

Large ribosomal subunit protein eL43