J4_9SRD_009

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAAG*(4AC)G*CAG*CC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|1|G|2875
9SRD|1|1|A|2876
9SRD|1|1|A|2877
9SRD|1|1|G|2878
*
9SRD|1|1|4AC|2908
9SRD|1|1|G|2909
*
9SRD|1|1|C|2962
9SRD|1|1|A|2963
9SRD|1|1|G|2964
*
9SRD|1|1|C|3000
9SRD|1|1|C|3001

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BI

Large ribosomal subunit protein uL13

Chain BJ

Large ribosomal subunit protein uL14