J4_9SRD_010

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CAGUAACAC*GGC*GUAC*GG

Length

18 nucleotides

Bulged bases

9SRD|1|2|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|C|111
9SRD|1|2|A|112
9SRD|1|2|G|113
9SRD|1|2|U|114
9SRD|1|2|A|115
9SRD|1|2|A|116
9SRD|1|2|C|117
9SRD|1|2|A|118
9SRD|1|2|C|119
*
9SRD|1|2|G|247
9SRD|1|2|G|248
9SRD|1|2|C|249
*
9SRD|1|2|G|295
9SRD|1|2|U|296
9SRD|1|2|A|297
9SRD|1|2|C|298
*
9SRD|1|2|G|320
9SRD|1|2|G|321

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AE

30S ribosomal protein S4e

Chain AJ

30S ribosomal protein S8e

Chain AN

30S ribosomal protein S12

Chain AR

30S ribosomal protein S17