J4_9SRD_011

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAG*CAUAG*CGAAAGG*CGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|G|139
9SRD|1|2|A|140
9SRD|1|2|G|141
*
9SRD|1|2|C|175
9SRD|1|2|A|176
9SRD|1|2|U|177
9SRD|1|2|A|178
9SRD|1|2|G|179
*
9SRD|1|2|C|207
9SRD|1|2|G|208
9SRD|1|2|A|209
9SRD|1|2|A|210
9SRD|1|2|A|211
9SRD|1|2|G|212
9SRD|1|2|G|213
*
9SRD|1|2|C|228
9SRD|1|2|G|229
9SRD|1|2|C|230

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AE

30S ribosomal protein S4e

Chain AJ

30S ribosomal protein S8e