J4_9SRE_011

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GAG*CAUAG*CGAAAGG*CGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRE|1|2|G|139
9SRE|1|2|A|140
9SRE|1|2|G|141
*
9SRE|1|2|C|175
9SRE|1|2|A|176
9SRE|1|2|U|177
9SRE|1|2|A|178
9SRE|1|2|G|179
*
9SRE|1|2|C|207
9SRE|1|2|G|208
9SRE|1|2|A|209
9SRE|1|2|A|210
9SRE|1|2|A|211
9SRE|1|2|G|212
9SRE|1|2|G|213
*
9SRE|1|2|C|228
9SRE|1|2|G|229
9SRE|1|2|C|230

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AE

30S ribosomal protein S4e

Chain AJ

30S ribosomal protein S8e