J4_9SRE_012

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GCG*(4AC)GAAG*UGUAAAGGA(OMU)G*C(4AC)

Length

21 nucleotides

Bulged bases

9SRE|1|2|C|542, 9SRE|1|2|A|782

QA status

Modified nucleotides: 4AC, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRE|1|2|G|541
9SRE|1|2|C|542
9SRE|1|2|G|543
*
9SRE|1|2|4AC|731
9SRE|1|2|G|732
9SRE|1|2|A|733
9SRE|1|2|A|734
9SRE|1|2|G|735
*
9SRE|1|2|U|778
9SRE|1|2|G|779
9SRE|1|2|U|780
9SRE|1|2|A|781
9SRE|1|2|A|782
9SRE|1|2|A|783
9SRE|1|2|G|784
9SRE|1|2|G|785
9SRE|1|2|A|786
9SRE|1|2|OMU|787
9SRE|1|2|G|788
*
9SRE|1|2|C|850
9SRE|1|2|4AC|851

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain A0

Small ribosomal subunit protein eS32

Chain AI

30S ribosomal protein S8

Chain AM

30S ribosomal protein S11

Chain AN

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S15

Chain AR

30S ribosomal protein S17

Chain Bi

Large ribosomal subunit protein eL43