J4_9SRO_004

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGG*CAG*CCGUG*CC

Length

14 nucleotides

Bulged bases

9SRO|1|Y|U|8, 9SRO|1|Y|U|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRO|1|Y|G|7
9SRO|1|Y|U|8
9SRO|1|Y|G|9
9SRO|1|Y|G|10
*
9SRO|1|Y|C|26
9SRO|1|Y|A|27
9SRO|1|Y|G|28
*
9SRO|1|Y|C|44
9SRO|1|Y|C|45
9SRO|1|Y|G|46
9SRO|1|Y|U|57
9SRO|1|Y|G|58
*
9SRO|1|Y|C|74
9SRO|1|Y|C|75

Current chains

Chain Y

A/P-tRNA-Leu

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain l

Large ribosomal subunit protein uL16