J4_9SS5_008

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9SS5|1|D2|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS5|1|D2|C|1833
9SS5|1|D2|U|1834
9SS5|1|D2|G|1835
*
9SS5|1|D2|C|1905
9SS5|1|D2|G|1906
*
9SS5|1|D2|C|1924
9SS5|1|D2|C|1925
9SS5|1|D2|U|1926
9SS5|1|D2|A|1927
9SS5|1|D2|A|1928
9SS5|1|D2|G|1929
9SS5|1|D2|G|1930
9SS5|1|D2|U|1931
9SS5|1|D2|A|1932
9SS5|1|D2|G|1933
*
9SS5|1|D2|C|1967
9SS5|1|D2|G|1968
9SS5|1|D2|A|1969
9SS5|1|D2|A|1970
9SS5|1|D2|U|1971
9SS5|1|D2|G|1972

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2