J4_9SS6_007

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9SS6|1|D2|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS6|1|D2|G|1310
9SS6|1|D2|G|1311
9SS6|1|D2|U|1312
9SS6|1|D2|U|1313
9SS6|1|D2|C|1314
*
9SS6|1|D2|G|1338
9SS6|1|D2|G|1339
9SS6|1|D2|U|1340
9SS6|1|D2|G|1341
9SS6|1|D2|A|1342
9SS6|1|D2|G|1343
*
9SS6|1|D2|C|1404
9SS6|1|D2|U|1405
*
9SS6|1|D2|A|1597
9SS6|1|D2|A|1598
9SS6|1|D2|U|1599
9SS6|1|D2|C|1600
9SS6|1|D2|G|1601
9SS6|1|D2|U|1602
9SS6|1|D2|A|1603
9SS6|1|D2|C|1604

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B7

Large ribosomal subunit protein bL34

Chain BW

Large ribosomal subunit protein uL23