J4_9SS6_011

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9SS6|1|D2|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS6|1|D2|C|1833
9SS6|1|D2|U|1834
9SS6|1|D2|G|1835
*
9SS6|1|D2|C|1905
9SS6|1|D2|G|1906
*
9SS6|1|D2|C|1924
9SS6|1|D2|C|1925
9SS6|1|D2|U|1926
9SS6|1|D2|A|1927
9SS6|1|D2|A|1928
9SS6|1|D2|G|1929
9SS6|1|D2|G|1930
9SS6|1|D2|U|1931
9SS6|1|D2|A|1932
9SS6|1|D2|G|1933
*
9SS6|1|D2|C|1967
9SS6|1|D2|G|1968
9SS6|1|D2|A|1969
9SS6|1|D2|A|1970
9SS6|1|D2|U|1971
9SS6|1|D2|G|1972

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2

Chain D1

Small subunit ribosomal RNA; SSU rRNA