J4_9SS6_011
3D structure
- PDB id
- 9SS6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from RimM-KO
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9SS6|1|D2|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9SS6_011 not in the Motif Atlas
- Homologous match to J4_8B0X_012
- Geometric discrepancy: 0.0553
- The information below is about J4_8B0X_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.3
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
9SS6|1|D2|C|1833
9SS6|1|D2|U|1834
9SS6|1|D2|G|1835
*
9SS6|1|D2|C|1905
9SS6|1|D2|G|1906
*
9SS6|1|D2|C|1924
9SS6|1|D2|C|1925
9SS6|1|D2|U|1926
9SS6|1|D2|A|1927
9SS6|1|D2|A|1928
9SS6|1|D2|G|1929
9SS6|1|D2|G|1930
9SS6|1|D2|U|1931
9SS6|1|D2|A|1932
9SS6|1|D2|G|1933
*
9SS6|1|D2|C|1967
9SS6|1|D2|G|1968
9SS6|1|D2|A|1969
9SS6|1|D2|A|1970
9SS6|1|D2|U|1971
9SS6|1|D2|G|1972
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2
- Chain D1
- Small subunit ribosomal RNA; SSU rRNA
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