J4_9T0Y_008

3D structure

PDB id

9T0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-9 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9T0Y|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T0Y|1|a|G|1310
9T0Y|1|a|G|1311
9T0Y|1|a|U|1312
9T0Y|1|a|U|1313
9T0Y|1|a|C|1314
*
9T0Y|1|a|G|1338
9T0Y|1|a|G|1339
9T0Y|1|a|U|1340
9T0Y|1|a|G|1341
9T0Y|1|a|A|1342
9T0Y|1|a|G|1343
*
9T0Y|1|a|C|1404
9T0Y|1|a|U|1405
*
9T0Y|1|a|A|1597
9T0Y|1|a|A|1598
9T0Y|1|a|U|1599
9T0Y|1|a|C|1600
9T0Y|1|a|G|1601
9T0Y|1|a|U|1602
9T0Y|1|a|A|1603
9T0Y|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23