J4_9T7H_011

3D structure

PDB id

9T7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAG*CAUAG*CGAAAGG*CGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T7H|1|2|G|139
9T7H|1|2|A|140
9T7H|1|2|G|141
*
9T7H|1|2|C|175
9T7H|1|2|A|176
9T7H|1|2|U|177
9T7H|1|2|A|178
9T7H|1|2|G|179
*
9T7H|1|2|C|207
9T7H|1|2|G|208
9T7H|1|2|A|209
9T7H|1|2|A|210
9T7H|1|2|A|211
9T7H|1|2|G|212
9T7H|1|2|G|213
*
9T7H|1|2|C|228
9T7H|1|2|G|229
9T7H|1|2|C|230

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AE

30S ribosomal protein S4e

Chain AJ

30S ribosomal protein S8e