J4_9TEZ_012

3D structure

PDB id

9TEZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDroS bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

9TEZ|1|Z|U|8, 9TEZ|1|Z|U|47, 9TEZ|1|Z|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TEZ_012 not in the Motif Atlas

Homologous match to J4_3TUP_001

Geometric discrepancy: 0.2009

The information below is about J4_3TUP_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.2

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

49

Unit IDs

9TEZ|1|Z|A|7
9TEZ|1|Z|U|8
9TEZ|1|Z|A|9
9TEZ|1|Z|G|10
*
9TEZ|1|Z|C|25
9TEZ|1|Z|A|26
9TEZ|1|Z|G|27
*
9TEZ|1|Z|C|43
9TEZ|1|Z|G|44
9TEZ|1|Z|U|45
9TEZ|1|Z|G|46
9TEZ|1|Z|U|47
9TEZ|1|Z|C|48
9TEZ|1|Z|C|49
*
9TEZ|1|Z|G|65
9TEZ|1|Z|U|66

Current chains

Chain Z

P-site Phe-tRNA

Nearby chains

Chain V

Large subunit ribosomal RNA; LSU rRNA

Chain W

Peptide chain release factor RF1

Chain l

Large ribosomal subunit protein uL16