J4_9TKN_002

3D structure

PDB id

9TKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S pre-initiation complex with IF2 and IF1 bound (30S PIC-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9TKN|1|D1|C|183, 9TKN|1|D1|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKN|1|D1|G|142
9TKN|1|D1|A|143
9TKN|1|D1|G|144
*
9TKN|1|D1|C|178
9TKN|1|D1|A|179
9TKN|1|D1|U|180
9TKN|1|D1|A|181
9TKN|1|D1|A|182
9TKN|1|D1|C|183
9TKN|1|D1|G|184
*
9TKN|1|D1|C|193
9TKN|1|D1|C|194
9TKN|1|D1|A|195
9TKN|1|D1|A|196
9TKN|1|D1|A|197
9TKN|1|D1|G|198
*
9TKN|1|D1|U|219
9TKN|1|D1|G|220
9TKN|1|D1|C|221

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AS

Small ribosomal subunit protein bS20