J4_9TKN_004

3D structure

PDB id

9TKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S pre-initiation complex with IF2 and IF1 bound (30S PIC-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

9TKN|1|D5|U|8, 9TKN|1|D5|U|47, 9TKN|1|D5|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKN|1|D5|G|7
9TKN|1|D5|U|8
9TKN|1|D5|G|9
9TKN|1|D5|G|10
*
9TKN|1|D5|C|25
9TKN|1|D5|G|26
9TKN|1|D5|U|27
*
9TKN|1|D5|A|43
9TKN|1|D5|A|44
9TKN|1|D5|G|45
9TKN|1|D5|G|46
9TKN|1|D5|U|47
9TKN|1|D5|C|48
9TKN|1|D5|G|49
*
9TKN|1|D5|C|65
9TKN|1|D5|C|66

Current chains

Chain D5

tRNAfMet

Nearby chains

Chain AL

Small ribosomal subunit protein uS13

Chain D1

Small subunit ribosomal RNA; SSU rRNA