J4_9TKP_002

3D structure

PDB id

9TKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Initiation Complex with extended IF2 bound (70S IC-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9TKP|1|D1|C|183, 9TKP|1|D1|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKP|1|D1|G|142
9TKP|1|D1|A|143
9TKP|1|D1|G|144
*
9TKP|1|D1|C|178
9TKP|1|D1|A|179
9TKP|1|D1|U|180
9TKP|1|D1|A|181
9TKP|1|D1|A|182
9TKP|1|D1|C|183
9TKP|1|D1|G|184
*
9TKP|1|D1|C|193
9TKP|1|D1|C|194
9TKP|1|D1|A|195
9TKP|1|D1|A|196
9TKP|1|D1|A|197
9TKP|1|D1|G|198
*
9TKP|1|D1|U|219
9TKP|1|D1|G|220
9TKP|1|D1|C|221

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AT

Small ribosomal subunit protein bS20