J4_9TKP_005

3D structure

PDB id

9TKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Initiation Complex with extended IF2 bound (70S IC-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9TKP|1|D2|U|653, 9TKP|1|D2|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKP|1|D2|C|601
9TKP|1|D2|A|602
9TKP|1|D2|A|603
9TKP|1|D2|G|604
*
9TKP|1|D2|C|624
9TKP|1|D2|G|625
9TKP|1|D2|A|626
9TKP|1|D2|A|627
9TKP|1|D2|G|628
*
9TKP|1|D2|C|635
9TKP|1|D2|G|636
9TKP|1|D2|A|637
9TKP|1|D2|G|638
*
9TKP|1|D2|C|650
9TKP|1|D2|G|651
9TKP|1|D2|U|652
9TKP|1|D2|U|653
9TKP|1|D2|A|654
9TKP|1|D2|A|655
9TKP|1|D2|G|656

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B8

Large ribosomal subunit protein bL35

Chain BD

Large ribosomal subunit protein uL4

Chain BO

Large ribosomal subunit protein uL15