J4_9TKP_006

3D structure

PDB id

9TKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Initiation Complex with extended IF2 bound (70S IC-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9TKP|1|D2|G|1271, 9TKP|1|D2|A|1272, 9TKP|1|D2|U|1273, 9TKP|1|D2|A|1275, 9TKP|1|D2|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKP|1|D2|C|1270
9TKP|1|D2|G|1271
9TKP|1|D2|A|1272
9TKP|1|D2|U|1273
9TKP|1|D2|A|1274
9TKP|1|D2|A|1275
9TKP|1|D2|A|1276
*
9TKP|1|D2|U|1294
9TKP|1|D2|C|1295
*
9TKP|1|D2|G|1645
9TKP|1|D2|C|1646
9TKP|1|D2|U|1647
9TKP|1|D2|U|1648
*
9TKP|1|D2|A|2009
9TKP|1|D2|G|2010

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B5

Large ribosomal subunit protein bL32

Chain BQ

Large ribosomal subunit protein bL17

Chain BV

Large ribosomal subunit protein uL22