J4_9TKQ_004

3D structure

PDB id

9TKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex bound to compact IF2-GDP (70S IC-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9TKQ|1|D2|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKQ|1|D2|C|268
9TKQ|1|D2|C|269
*
9TKQ|1|D2|G|370
9TKQ|1|D2|A|371
9TKQ|1|D2|G|372
9TKQ|1|D2|U|373
9TKQ|1|D2|A|374
9TKQ|1|D2|G|375
*
9TKQ|1|D2|U|399
9TKQ|1|D2|G|400
9TKQ|1|D2|A|401
9TKQ|1|D2|A|402
9TKQ|1|D2|U|403
9TKQ|1|D2|A|404
9TKQ|1|D2|U|405
9TKQ|1|D2|G|406
*
9TKQ|1|D2|C|421
9TKQ|1|D2|A|422
9TKQ|1|D2|A|423
9TKQ|1|D2|G|424

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B1

Large ribosomal subunit protein bL28

Chain BI

Large ribosomal subunit protein bL9