J4_9TMI_008

3D structure

PDB id

9TMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9TMI|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TMI|1|a|G|1310
9TMI|1|a|G|1311
9TMI|1|a|U|1312
9TMI|1|a|U|1313
9TMI|1|a|C|1314
*
9TMI|1|a|G|1338
9TMI|1|a|G|1339
9TMI|1|a|U|1340
9TMI|1|a|G|1341
9TMI|1|a|A|1342
9TMI|1|a|G|1343
*
9TMI|1|a|C|1404
9TMI|1|a|U|1405
*
9TMI|1|a|A|1597
9TMI|1|a|A|1598
9TMI|1|a|U|1599
9TMI|1|a|C|1600
9TMI|1|a|G|1601
9TMI|1|a|U|1602
9TMI|1|a|A|1603
9TMI|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23