J4_9TQA_008

3D structure

PDB id

9TQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9TQA|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TQA|1|a|G|1310
9TQA|1|a|G|1311
9TQA|1|a|U|1312
9TQA|1|a|U|1313
9TQA|1|a|C|1314
*
9TQA|1|a|G|1338
9TQA|1|a|G|1339
9TQA|1|a|U|1340
9TQA|1|a|G|1341
9TQA|1|a|A|1342
9TQA|1|a|G|1343
*
9TQA|1|a|C|1404
9TQA|1|a|U|1405
*
9TQA|1|a|A|1597
9TQA|1|a|A|1598
9TQA|1|a|U|1599
9TQA|1|a|C|1600
9TQA|1|a|G|1601
9TQA|1|a|U|1602
9TQA|1|a|A|1603
9TQA|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23