J4_9TT7_002

3D structure

PDB id

9TT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome of WT EBV infected human B-cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9TT7|1|L5|C|216, 9TT7|1|L5|C|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TT7|1|L5|C|196
9TT7|1|L5|A|197
9TT7|1|L5|A|198
9TT7|1|L5|G|199
*
9TT7|1|L5|C|215
9TT7|1|L5|C|216
9TT7|1|L5|C|217
9TT7|1|L5|A|218
9TT7|1|L5|G|219
9TT7|1|L5|C|220
9TT7|1|L5|C|221
9TT7|1|L5|C|222
*
9TT7|1|L5|G|226
9TT7|1|L5|A|227
9TT7|1|L5|C|228
*
9TT7|1|L5|G|240
9TT7|1|L5|G|241
9TT7|1|L5|U|242
9TT7|1|L5|A|243
9TT7|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26