J4_9TV2_005
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UC*GGUCAG*UC*GGCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 9TV2|1|L5|C|2427
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9TV2_005 not in the Motif Atlas
- Homologous match to J4_8GLP_006
- Geometric discrepancy: 0.0373
- The information below is about J4_8GLP_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.2
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
9TV2|1|L5|U|2399
9TV2|1|L5|C|2400
*
9TV2|1|L5|G|2424
9TV2|1|L5|G|2425
9TV2|1|L5|U|2426
9TV2|1|L5|C|2427
9TV2|1|L5|A|2428
9TV2|1|L5|G|2429
*
9TV2|1|L5|U|2528
9TV2|1|L5|C|2529
*
9TV2|1|L5|G|2767
9TV2|1|L5|G|2768
9TV2|1|L5|C|2769
9TV2|1|L5|C|2770
9TV2|1|L5|G|2771
9TV2|1|L5|U|2772
9TV2|1|L5|A|2773
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LR
- 60S ribosomal protein L19
- Chain LX
- 60S ribosomal protein L23a
- Chain Lg
- 60S ribosomal protein L34
- Chain Lk
- 60S ribosomal protein L38
- Chain Ll
- 60S ribosomal protein L39
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