J4_9TZE_012

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9TZE|1|a|U|1987

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TZE|1|a|C|1847
9TZE|1|a|U|1848
9TZE|1|a|G|1849
*
9TZE|1|a|C|1921
9TZE|1|a|G|1922
*
9TZE|1|a|C|1940
9TZE|1|a|C|1941
9TZE|1|a|U|1942
9TZE|1|a|A|1943
9TZE|1|a|A|1944
9TZE|1|a|G|1945
9TZE|1|a|G|1946
9TZE|1|a|U|1947
9TZE|1|a|A|1948
9TZE|1|a|G|1949
*
9TZE|1|a|C|1983
9TZE|1|a|G|1984
9TZE|1|a|A|1985
9TZE|1|a|A|1986
9TZE|1|a|U|1987
9TZE|1|a|G|1988

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain o

Large ribosomal subunit protein uL2