J4_9VVI_001

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9VVI|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VVI|1|A|G|115
9VVI|1|A|A|116
9VVI|1|A|G|117
9VVI|1|A|U|118
9VVI|1|A|A|119
9VVI|1|A|A|120
9VVI|1|A|U|121
9VVI|1|A|G|122
*
9VVI|1|A|U|239
9VVI|1|A|G|240
*
9VVI|1|A|C|286
9VVI|1|A|U|287
9VVI|1|A|A|288
9VVI|1|A|G|289
*
9VVI|1|A|C|311
9VVI|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17