J4_9VVI_001
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GAGUAAUG*UG*CUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9VVI|1|A|U|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9VVI_001 not in the Motif Atlas
- Homologous match to J4_8B0X_001
- Geometric discrepancy: 0.0599
- The information below is about J4_8B0X_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_90044.1
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9VVI|1|A|G|115
9VVI|1|A|A|116
9VVI|1|A|G|117
9VVI|1|A|U|118
9VVI|1|A|A|119
9VVI|1|A|A|120
9VVI|1|A|U|121
9VVI|1|A|G|122
*
9VVI|1|A|U|239
9VVI|1|A|G|240
*
9VVI|1|A|C|286
9VVI|1|A|U|287
9VVI|1|A|A|288
9VVI|1|A|G|289
*
9VVI|1|A|C|311
9VVI|1|A|C|312
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain P
- Small ribosomal subunit protein bS16
- Chain Q
- Small ribosomal subunit protein uS17
Coloring options: