J4_9VVI_014
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CU(2MG)*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9VVI|1|a|U|1971
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VVI|1|a|C|1833
9VVI|1|a|U|1834
9VVI|1|a|2MG|1835
*
9VVI|1|a|C|1905
9VVI|1|a|G|1906
*
9VVI|1|a|C|1924
9VVI|1|a|C|1925
9VVI|1|a|U|1926
9VVI|1|a|A|1927
9VVI|1|a|A|1928
9VVI|1|a|G|1929
9VVI|1|a|G|1930
9VVI|1|a|U|1931
9VVI|1|a|A|1932
9VVI|1|a|G|1933
*
9VVI|1|a|C|1967
9VVI|1|a|G|1968
9VVI|1|a|A|1969
9VVI|1|a|A|1970
9VVI|1|a|U|1971
9VVI|1|a|G|1972
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain W
- Probable ATP-binding protein YheS
- Chain Z
- Transfer RNA; tRNA
- Chain c
- Large ribosomal subunit protein uL2
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