J4_9VXN_002

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9VXN|1|L5|A|218, 9VXN|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXN|1|L5|C|196
9VXN|1|L5|A|197
9VXN|1|L5|A|198
9VXN|1|L5|G|199
*
9VXN|1|L5|C|215
9VXN|1|L5|C|216
9VXN|1|L5|C|217
9VXN|1|L5|A|218
9VXN|1|L5|G|219
9VXN|1|L5|C|220
9VXN|1|L5|C|221
9VXN|1|L5|C|222
*
9VXN|1|L5|G|226
9VXN|1|L5|A|227
9VXN|1|L5|C|228
*
9VXN|1|L5|G|240
9VXN|1|L5|G|241
9VXN|1|L5|U|242
9VXN|1|L5|A|243
9VXN|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LY

Large ribosomal subunit protein uL24