J4_9VXN_006
3D structure
- PDB id
- 9VXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.51 Å
Loop
- Sequence
- UC*GGUCAG*UC*GGCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 9VXN|1|L5|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9VXN_006 not in the Motif Atlas
- Homologous match to J4_8GLP_006
- Geometric discrepancy: 0.0337
- The information below is about J4_8GLP_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.2
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
9VXN|1|L5|U|2409
9VXN|1|L5|C|2410
*
9VXN|1|L5|G|2434
9VXN|1|L5|G|2435
9VXN|1|L5|U|2436
9VXN|1|L5|C|2437
9VXN|1|L5|A|2438
9VXN|1|L5|G|2439
*
9VXN|1|L5|U|2538
9VXN|1|L5|C|2539
*
9VXN|1|L5|G|2777
9VXN|1|L5|G|2778
9VXN|1|L5|C|2779
9VXN|1|L5|C|2780
9VXN|1|L5|G|2781
9VXN|1|L5|U|2782
9VXN|1|L5|A|2783
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LR
- Large ribosomal subunit protein eL19
- Chain LX
- Large ribosomal subunit protein uL23
- Chain Lg
- Large ribosomal subunit protein eL34
- Chain Lk
- Large ribosomal subunit protein eL38
- Chain Ll
- Large ribosomal subunit protein eL39
Coloring options: