J4_9VXN_007

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9VXN|1|L5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXN|1|L5|G|2618
9VXN|1|L5|G|2619
*
9VXN|1|L5|U|2637
9VXN|1|L5|G|2638
9VXN|1|L5|U|2639
9VXN|1|L5|G|2640
9VXN|1|L5|A|2641
9VXN|1|L5|A|2642
*
9VXN|1|L5|U|2692
9VXN|1|L5|G|2693
9VXN|1|L5|G|2694
9VXN|1|L5|A|2695
9VXN|1|L5|A|2696
9VXN|1|L5|A|2697
9VXN|1|L5|G|2698
*
9VXN|1|L5|U|2718
9VXN|1|L5|C|2719

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain LU

Large ribosomal subunit protein eL22

Chain Lg

Large ribosomal subunit protein eL34

Chain Lk

Large ribosomal subunit protein eL38