J4_9VXN_008
3D structure
- PDB id
- 9VXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.51 Å
Loop
- Sequence
- GAC(PSU)G*CAAAG*UGAUU*A(PSU)GA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VXN|1|L5|G|3634
9VXN|1|L5|A|3635
9VXN|1|L5|C|3636
9VXN|1|L5|PSU|3637
9VXN|1|L5|G|3638
*
9VXN|1|L5|C|3650
9VXN|1|L5|A|3651
9VXN|1|L5|A|3652
9VXN|1|L5|A|3653
9VXN|1|L5|G|3654
*
9VXN|1|L5|U|3690
9VXN|1|L5|G|3691
9VXN|1|L5|A|3692
9VXN|1|L5|U|3693
9VXN|1|L5|U|3694
*
9VXN|1|L5|A|3821
9VXN|1|L5|PSU|3822
9VXN|1|L5|G|3823
9VXN|1|L5|A|3824
9VXN|1|L5|A2M|3825
9VXN|1|L5|C|3826
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2
- Chain Ln
- Small ribosomal subunit protein eS32
- Chain Lp
- Large ribosomal subunit protein eL43
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: