J4_9VXN_014
3D structure
- PDB id
- 9VXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.51 Å
Loop
- Sequence
- AUAG*CAGG*CCGUGUCC*GU
- Length
- 18 nucleotides
- Bulged bases
- 9VXN|1|u|U|47, 9VXN|1|u|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9VXN_014 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.362
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9VXN|1|u|A|7
9VXN|1|u|U|8
9VXN|1|u|A|9
9VXN|1|u|G|10
*
9VXN|1|u|C|25
9VXN|1|u|A|26
9VXN|1|u|G|27
9VXN|1|u|G|28
*
9VXN|1|u|C|42
9VXN|1|u|C|43
9VXN|1|u|G|44
9VXN|1|u|U|45
9VXN|1|u|G|46
9VXN|1|u|U|47
9VXN|1|u|C|48
9VXN|1|u|C|49
*
9VXN|1|u|G|65
9VXN|1|u|U|66
Current chains
- Chain u
- A/P-tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Ribosomal protein uL16-like
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- Small ribosomal subunit protein uS19
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