J4_9WNR_002

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAG*CAUAACG*CCAAAGAGGG*CUCUUGC

Length

27 nucleotides

Bulged bases

9WNR|1|A|C|183, 9WNR|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WNR|1|A|G|142
9WNR|1|A|A|143
9WNR|1|A|G|144
*
9WNR|1|A|C|178
9WNR|1|A|A|179
9WNR|1|A|U|180
9WNR|1|A|A|181
9WNR|1|A|A|182
9WNR|1|A|C|183
9WNR|1|A|G|184
*
9WNR|1|A|C|193
9WNR|1|A|C|194
9WNR|1|A|A|195
9WNR|1|A|A|196
9WNR|1|A|A|197
9WNR|1|A|G|198
9WNR|1|A|A|199
9WNR|1|A|G|200
9WNR|1|A|G|201
9WNR|1|A|G|202
*
9WNR|1|A|C|215
9WNR|1|A|U|216
9WNR|1|A|C|217
9WNR|1|A|U|218
9WNR|1|A|U|219
9WNR|1|A|G|220
9WNR|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20