J4_9WNR_006

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UUGG*CAC*GGGGUCG*UA

Length

16 nucleotides

Bulged bases

9WNR|1|Z|U|8, 9WNR|1|Z|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WNR_006 not in the Motif Atlas

Homologous match to J4_7MRL_001

Geometric discrepancy: 0.1771

The information below is about J4_7MRL_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

9WNR|1|Z|U|7
9WNR|1|Z|U|8
9WNR|1|Z|G|9
9WNR|1|Z|G|10
*
9WNR|1|Z|C|26
9WNR|1|Z|A|27
9WNR|1|Z|C|28
*
9WNR|1|Z|G|44
9WNR|1|Z|G|45
9WNR|1|Z|G|46
9WNR|1|Z|G|47
9WNR|1|Z|U|48
9WNR|1|Z|C|49
9WNR|1|Z|G|50
*
9WNR|1|Z|U|66
9WNR|1|Z|A|67

Current chains

Chain Z

P-tRNA(PRO), A-tRNA(PRO)

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA