J4_9WW4_001

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9WW4|1|AA|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WW4_001 not in the Motif Atlas

Homologous match to J4_8GLP_001

Geometric discrepancy: 0.0369

The information below is about J4_8GLP_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.4

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9WW4|1|AA|C|111
9WW4|1|AA|C|112
*
9WW4|1|AA|G|278
9WW4|1|AA|A|279
9WW4|1|AA|G|280
9WW4|1|AA|U|281
9WW4|1|AA|C|282
9WW4|1|AA|G|283
*
9WW4|1|AA|C|304
9WW4|1|AA|A|305
9WW4|1|AA|A|306
9WW4|1|AA|A|307
9WW4|1|AA|G|308
9WW4|1|AA|C|309
9WW4|1|AA|G|310
*
9WW4|1|AA|U|327
9WW4|1|AA|A|328
9WW4|1|AA|A|329
9WW4|1|AA|G|330

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AN

60S ribosomal protein L13

Chain AP

60S ribosomal protein L15

Chain Aj

60S ribosomal protein L35

Chain Ak

60S ribosomal protein L36