J4_9WW4_002
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CAAG*CCCAGCCC*GAC*GGUAG
- Length
- 20 nucleotides
- Bulged bases
- 9WW4|1|AA|A|218, 9WW4|1|AA|G|219
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9WW4_002 not in the Motif Atlas
- Homologous match to J4_8GLP_002
- Geometric discrepancy: 0.4074
- The information below is about J4_8GLP_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WW4|1|AA|C|196
9WW4|1|AA|A|197
9WW4|1|AA|A|198
9WW4|1|AA|G|199
*
9WW4|1|AA|C|215
9WW4|1|AA|C|216
9WW4|1|AA|C|217
9WW4|1|AA|A|218
9WW4|1|AA|G|219
9WW4|1|AA|C|220
9WW4|1|AA|C|221
9WW4|1|AA|C|222
*
9WW4|1|AA|G|226
9WW4|1|AA|A|227
9WW4|1|AA|C|228
*
9WW4|1|AA|G|240
9WW4|1|AA|G|241
9WW4|1|AA|U|242
9WW4|1|AA|A|243
9WW4|1|AA|G|244
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AF
- Large ribosomal subunit protein uL4
- Chain Aa
- 60S ribosomal protein L26
Coloring options: