J4_9WW6_002

3D structure

PDB id

9WW6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome delta eL41 non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9WW6|1|AA|C|216, 9WW6|1|AA|C|217, 9WW6|1|AA|A|218, 9WW6|1|AA|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW6|1|AA|C|196
9WW6|1|AA|A|197
9WW6|1|AA|A|198
9WW6|1|AA|G|199
*
9WW6|1|AA|C|215
9WW6|1|AA|C|216
9WW6|1|AA|C|217
9WW6|1|AA|A|218
9WW6|1|AA|G|219
9WW6|1|AA|C|220
9WW6|1|AA|C|221
9WW6|1|AA|C|222
*
9WW6|1|AA|G|226
9WW6|1|AA|A|227
9WW6|1|AA|C|228
*
9WW6|1|AA|G|240
9WW6|1|AA|G|241
9WW6|1|AA|U|242
9WW6|1|AA|A|243
9WW6|1|AA|G|244

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain Aa

60S ribosomal protein L26