J4_9WW6_003

3D structure

PDB id

9WW6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome delta eL41 non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CUCC*GCC*GCGCG*CGGAGCG

Length

19 nucleotides

Bulged bases

9WW6|1|AA|G|1269, 9WW6|1|AA|A|1270, 9WW6|1|AA|G|1271, 9WW6|1|AA|C|1272

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW6|1|AA|C|981
9WW6|1|AA|U|982
9WW6|1|AA|C|983
9WW6|1|AA|C|984
*
9WW6|1|AA|G|1070
9WW6|1|AA|C|1071
9WW6|1|AA|C|1072
*
9WW6|1|AA|G|1240
9WW6|1|AA|C|1241
9WW6|1|AA|G|1242
9WW6|1|AA|C|1243
9WW6|1|AA|G|1244
*
9WW6|1|AA|C|1267
9WW6|1|AA|G|1268
9WW6|1|AA|G|1269
9WW6|1|AA|A|1270
9WW6|1|AA|G|1271
9WW6|1|AA|C|1272
9WW6|1|AA|G|1273

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AH

Large ribosomal subunit protein eL6

Chain AI

60S ribosomal protein L7

Chain Ad

60S ribosomal protein L29