J4_9XFK_009

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9XFK|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XFK|1|I|C|1833
9XFK|1|I|U|1834
9XFK|1|I|2MG|1835
*
9XFK|1|I|C|1905
9XFK|1|I|G|1906
*
9XFK|1|I|C|1924
9XFK|1|I|C|1925
9XFK|1|I|U|1926
9XFK|1|I|A|1927
9XFK|1|I|A|1928
9XFK|1|I|G|1929
9XFK|1|I|G|1930
9XFK|1|I|U|1931
9XFK|1|I|A|1932
9XFK|1|I|G|1933
*
9XFK|1|I|C|1967
9XFK|1|I|G|1968
9XFK|1|I|A|1969
9XFK|1|I|A|1970
9XFK|1|I|U|1971
9XFK|1|I|G|1972

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL2