J4_9XFK_011

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XFK|1|I|G|2643
9XFK|1|I|G|2644
9XFK|1|I|G|2645
9XFK|1|I|C|2646
*
9XFK|1|I|G|2674
9XFK|1|I|A|2675
9XFK|1|I|C|2676
*
9XFK|1|I|G|2731
9XFK|1|I|G|2732
9XFK|1|I|A|2733
9XFK|1|I|A|2734
9XFK|1|I|G|2735
*
9XFK|1|I|U|2769
9XFK|1|I|G|2770
9XFK|1|I|C|2771

Current chains

Chain I

23S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL3

Chain R

50S ribosomal protein L13

Chain S

Large ribosomal subunit protein uL14