J4_9XFL_009

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CU(2MG)*CGGC*GUCCUAAGGUAG*CGAAUG

Length

25 nucleotides

Bulged bases

9XFL|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XFL|1|I|C|1833
9XFL|1|I|U|1834
9XFL|1|I|2MG|1835
*
9XFL|1|I|C|1905
9XFL|1|I|G|1906
9XFL|1|I|G|1907
9XFL|1|I|C|1908
*
9XFL|1|I|G|1922
9XFL|1|I|U|1923
9XFL|1|I|C|1924
9XFL|1|I|C|1925
9XFL|1|I|U|1926
9XFL|1|I|A|1927
9XFL|1|I|A|1928
9XFL|1|I|G|1929
9XFL|1|I|G|1930
9XFL|1|I|U|1931
9XFL|1|I|A|1932
9XFL|1|I|G|1933
*
9XFL|1|I|C|1967
9XFL|1|I|G|1968
9XFL|1|I|A|1969
9XFL|1|I|A|1970
9XFL|1|I|U|1971
9XFL|1|I|G|1972

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL2