J4_9XWO_001
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- AUAG*CGC*GAG(G7M)UCU*AU
- Length
- 16 nucleotides
- Bulged bases
- 9XWO|1|5|U|8, 9XWO|1|5|U|47, 9XWO|1|5|C|48
- QA status
- Modified nucleotides: G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9XWO_001 not in the Motif Atlas
- Homologous match to J4_7UQ6_001
- Geometric discrepancy: 0.2146
- The information below is about J4_7UQ6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
9XWO|1|5|A|7
9XWO|1|5|U|8
9XWO|1|5|A|9
9XWO|1|5|G|10
*
9XWO|1|5|C|25
9XWO|1|5|G|26
9XWO|1|5|C|27
*
9XWO|1|5|G|43
9XWO|1|5|A|44
9XWO|1|5|G|45
9XWO|1|5|G7M|46
9XWO|1|5|U|47
9XWO|1|5|C|48
9XWO|1|5|U|49
*
9XWO|1|5|A|65
9XWO|1|5|U|66
Current chains
- Chain 5
- E-site tRNA (tRNAAla)
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL33
- Chain G
- 30S ribosomal protein S7
Coloring options: