J4_9XWO_005
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GUAG*CAA*UGG(G7M)UCG*UC
- Length
- 16 nucleotides
- Bulged bases
- 9XWO|1|Y|U|8, 9XWO|1|Y|U|48, 9XWO|1|Y|C|49
- QA status
- Modified nucleotides: G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9XWO_005 not in the Motif Atlas
- Homologous match to J4_7MRL_001
- Geometric discrepancy: 0.1906
- The information below is about J4_7MRL_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
9XWO|1|Y|G|7
9XWO|1|Y|U|8
9XWO|1|Y|A|9
9XWO|1|Y|G|10
*
9XWO|1|Y|C|26
9XWO|1|Y|A|27
9XWO|1|Y|A|28
*
9XWO|1|Y|U|44
9XWO|1|Y|G|45
9XWO|1|Y|G|46
9XWO|1|Y|G7M|47
9XWO|1|Y|U|48
9XWO|1|Y|C|49
9XWO|1|Y|G|50
*
9XWO|1|Y|U|66
9XWO|1|Y|C|67
Current chains
- Chain Y
- A-site tRNA (prolyl-tRNAPro)
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: