J4_9Y49_001

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9Y49|1|A5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Y49_001 not in the Motif Atlas

Homologous match to J4_8GLP_001

Geometric discrepancy: 0.1504

The information below is about J4_8GLP_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9Y49|1|A5|C|111
9Y49|1|A5|C|112
*
9Y49|1|A5|G|278
9Y49|1|A5|A|279
9Y49|1|A5|G|280
9Y49|1|A5|U|281
9Y49|1|A5|C|282
9Y49|1|A5|G|283
*
9Y49|1|A5|C|304
9Y49|1|A5|A|305
9Y49|1|A5|A|306
9Y49|1|A5|A|307
9Y49|1|A5|G|308
9Y49|1|A5|C|309
9Y49|1|A5|G|310
*
9Y49|1|A5|U|327
9Y49|1|A5|A|328
9Y49|1|A5|A|329
9Y49|1|A5|G|330

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CL

60S ribosomal protein L13

Chain CN

60S ribosomal protein L15

Chain Ch

60S ribosomal protein L35

Chain Ci

60S ribosomal protein L36