J4_9Y49_002

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9Y49|1|A5|C|216, 9Y49|1|A5|C|217, 9Y49|1|A5|A|218, 9Y49|1|A5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y49|1|A5|C|196
9Y49|1|A5|A|197
9Y49|1|A5|A|198
9Y49|1|A5|G|199
*
9Y49|1|A5|C|215
9Y49|1|A5|C|216
9Y49|1|A5|C|217
9Y49|1|A5|A|218
9Y49|1|A5|G|219
9Y49|1|A5|C|220
9Y49|1|A5|C|221
9Y49|1|A5|C|222
*
9Y49|1|A5|G|226
9Y49|1|A5|A|227
9Y49|1|A5|C|228
*
9Y49|1|A5|G|240
9Y49|1|A5|G|241
9Y49|1|A5|U|242
9Y49|1|A5|A|243
9Y49|1|A5|G|244

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CY

60S ribosomal protein L26