J4_9Y49_003

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9Y49|1|A6|A|2366, 9Y49|1|A6|U|2369, 9Y49|1|A6|A|2370, 9Y49|1|A6|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y49|1|A6|C|2365
9Y49|1|A6|A|2366
9Y49|1|A6|A|2367
9Y49|1|A6|A|2368
9Y49|1|A6|U|2369
9Y49|1|A6|A|2370
9Y49|1|A6|U|2371
*
9Y49|1|A6|A|2389
9Y49|1|A6|G|2390
9Y49|1|A6|G|2391
*
9Y49|1|A6|C|2824
9Y49|1|A6|A|2825
9Y49|1|A6|U|2826
9Y49|1|A6|G|2827
9Y49|1|A6|U|2828
9Y49|1|A6|U|2829
*
9Y49|1|A6|A|3856
9Y49|1|A6|G|3857

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CP

60S ribosomal protein L17

Chain CR

Large ribosomal subunit protein eL19

Chain Cd

60S ribosomal protein L31