J4_9Y49_006

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y49|1|A6|G|3634
9Y49|1|A6|A|3635
9Y49|1|A6|C|3636
9Y49|1|A6|U|3637
9Y49|1|A6|G|3638
*
9Y49|1|A6|C|3650
9Y49|1|A6|A|3651
9Y49|1|A6|A|3652
9Y49|1|A6|A|3653
9Y49|1|A6|G|3654
*
9Y49|1|A6|U|3690
9Y49|1|A6|G|3691
9Y49|1|A6|A|3692
9Y49|1|A6|U|3693
9Y49|1|A6|U|3694
*
9Y49|1|A6|A|3821
9Y49|1|A6|U|3822
9Y49|1|A6|G|3823
9Y49|1|A6|A|3824
9Y49|1|A6|A|3825
9Y49|1|A6|C|3826

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain CA

60S ribosomal protein L8

Chain Cn

60S ribosomal protein L41

Chain Cp

60S ribosomal protein L37a