J4_9Y49_011

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAAAAG*CGAAAG*CCAUAAACGAUG*UUC

Length

30 nucleotides

Bulged bases

9Y49|1|B2|A|668, 9Y49|1|B2|A|672, 9Y49|1|B2|A|1083, 9Y49|1|B2|C|1085, 9Y49|1|B2|A|1087

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y49|1|B2|G|665
9Y49|1|B2|U|666
9Y49|1|B2|U|667
9Y49|1|B2|A|668
9Y49|1|B2|A|669
9Y49|1|B2|A|670
9Y49|1|B2|A|671
9Y49|1|B2|A|672
9Y49|1|B2|G|673
*
9Y49|1|B2|C|1032
9Y49|1|B2|G|1033
9Y49|1|B2|A|1034
9Y49|1|B2|A|1035
9Y49|1|B2|A|1036
9Y49|1|B2|G|1037
*
9Y49|1|B2|C|1078
9Y49|1|B2|C|1079
9Y49|1|B2|A|1080
9Y49|1|B2|U|1081
9Y49|1|B2|A|1082
9Y49|1|B2|A|1083
9Y49|1|B2|A|1084
9Y49|1|B2|C|1085
9Y49|1|B2|G|1086
9Y49|1|B2|A|1087
9Y49|1|B2|U|1088
9Y49|1|B2|G|1089
*
9Y49|1|B2|U|1160
9Y49|1|B2|U|1161
9Y49|1|B2|C|1162

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain AL

40S ribosomal protein S11

Chain AN

40S ribosomal protein S13

Chain AO

40S ribosomal protein S14

Chain AW

40S ribosomal protein S15a

Chain AX

40S ribosomal protein S23

Chain Aa

40S ribosomal protein S26

Chain Cn

60S ribosomal protein L41