J4_9Y49_012
3D structure
- PDB id
- 9Y49 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9Y49|1|tR|U|8, 9Y49|1|tR|U|48, 9Y49|1|tR|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Y49_012 not in the Motif Atlas
- Homologous match to J4_1QU2_001
- Geometric discrepancy: 0.3152
- The information below is about J4_1QU2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
9Y49|1|tR|G|7
9Y49|1|tR|U|8
9Y49|1|tR|G|9
9Y49|1|tR|G|10
*
9Y49|1|tR|C|26
9Y49|1|tR|G|27
9Y49|1|tR|U|28
*
9Y49|1|tR|A|44
9Y49|1|tR|A|45
9Y49|1|tR|G|46
9Y49|1|tR|G|47
9Y49|1|tR|U|48
9Y49|1|tR|C|49
9Y49|1|tR|G|50
*
9Y49|1|tR|C|66
9Y49|1|tR|C|67
Current chains
- Chain tR
- tRNA (77-MER)
Nearby chains
- Chain B2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Co
- 60S ribosomal protein L36a
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