J4_9YDC_003
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 9YDC|1|A|A|1452, 9YDC|1|A|U|1455, 9YDC|1|A|A|1456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDC|1|A|C|1451
9YDC|1|A|A|1452
9YDC|1|A|A|1453
9YDC|1|A|A|1454
9YDC|1|A|U|1455
9YDC|1|A|A|1456
9YDC|1|A|U|1457
*
9YDC|1|A|A|1475
9YDC|1|A|G|1476
*
9YDC|1|A|U|1877
9YDC|1|A|G|1878
9YDC|1|A|A|1879
9YDC|1|A|U|1880
*
9YDC|1|A|A|2352
9YDC|1|A|G|2353
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LR
- 60S ribosomal protein L17-A
- Chain LT
- 60S ribosomal protein L19-A
- Chain Lf
- 60S ribosomal protein L31-A
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